JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NMUR2_chr5_152386546_152410279	1/0	a0006	415	1	0	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0007	415	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0008	415	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0009	415	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0010	415	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMU_chr4_55590231_55641298	1/1	a0001	174	323	77	56	135	16	37	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0002	174	68	8	15	41	0	4	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0003	174	6	6	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0004	174	6	1	3	0	2	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0005	174	5	5	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0006	174	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0007	174	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0008	174	1	0	0	0	0	1	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	a0009	174	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NNAT_chr20_37516250_37528690	1/1	a0001	81	408	96	82	184	8	36	copy fasta	NNAT	chr20	37516250	37528690
NNMT_chr11_114291399_114318536	1/1	a0001	264	421	98	74	188	10	49	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	a0002	264	2	2	0	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	a0003	264	1	0	0	0	0	1	copy fasta	NNMT	chr11	114291399	114318536
NNT_chr5_43598180_43712396	1/1	a0001	1086	151	68	29	28	2	22	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0002	1086	23	0	3	16	0	4	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0003	1086	6	0	0	3	0	3	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0004	1086	3	3	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0005	1086	1	0	0	0	0	1	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0006	1086	1	0	0	1	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0007	1086	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0008	1086	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	a0009	1086	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NOA1_chr4_56958350_56982606	1/1	a0001	698	333	77	59	140	13	42	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0002	698	57	3	17	36	0	1	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0003	698	6	6	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0004	698	4	4	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0005	698	3	0	0	0	1	2	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0006	698	2	2	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0007	698	1	0	1	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0008	698	1	0	0	0	0	1	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0009	691	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0010	698	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	a0011	698	1	0	1	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOB1_chr16_69736871_69759926	0/0	a0001	412	299	80	33	156	5	25	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/1	a0002	412	134	12	33	61	8	19	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0003	412	8	0	6	0	1	1	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0004	412	2	0	1	0	1	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0005	412	1	0	1	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0006	412	1	0	0	0	0	1	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0007	412	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0008	412	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0009	412	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	a0010	412	1	0	0	0	1	0	copy fasta	NOB1	chr16	69736871	69759926
NOBOX_chr7_144392240_144415227	0/1	a0001	691	170	35	28	82	3	21	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	1/0	a0002	691	114	34	26	37	4	12	copy fasta	NOBOX	chr7	144392240	144415227