JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOBOX_chr7_144392240_144415227	0/0	a0003	691	33	2	12	6	4	9	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0004	691	9	9	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0005	691	8	7	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0006	691	6	6	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0007	691	4	1	2	0	1	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0008	691	2	2	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0009	691	1	0	0	1	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0010	691	1	1	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0011	691	1	1	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0012	691	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0013	691	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	a0014	691	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOC2L_chr1_939203_964256	0/1	a0001	749	375	86	73	163	14	38	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0002	749	20	3	6	8	0	3	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0003	749	9	0	3	0	2	4	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	1/0	a0004	749	8	7	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0005	749	3	0	0	0	0	3	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0006	749	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0007	749	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0008	749	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0009	749	1	0	1	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0010	749	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0011	749	1	0	1	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	a0012	749	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC3L_chr10_94328226_94367939	1/1	a0001	800	176	39	35	72	12	16	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0002	800	93	11	6	61	2	13	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0003	800	38	0	6	28	2	2	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0004	800	28	11	7	0	2	8	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0005	800	18	18	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0006	800	7	0	0	7	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0007	800	5	5	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0008	800	3	2	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0009	800	3	3	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0010	800	2	2	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0011	800	1	0	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0012	800	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0013	800	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0014	800	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0015	800	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0016	800	1	0	0	0	0	1	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	a0017	800	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC4L_chr12_132139457_132157468	1/1	a0001	516	226	65	51	80	9	19	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0002	322	34	10	2	16	1	5	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0003	351	6	1	2	3	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0004	326	4	1	1	2	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0005	317	4	0	0	4	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0006	516	2	0	1	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0007	326	2	0	0	2	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0008	323	2	0	1	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0009	516	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468