JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOC4L_chr12_132139457_132157468	0/0	a0010	516	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0011	326	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0012	326	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0013	323	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0014	340	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0015	516	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0016	516	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0017	516	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0018	516	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0019	516	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0020	516	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0021	516	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	a0022	516	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOCT_chr4_139010781_139050939	1/1	a0001	431	362	89	70	143	16	42	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	a0002	431	21	5	0	16	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	a0003	431	1	0	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOD1_chr7_30419527_30483784	1/1	a0001	953	197	36	42	82	10	25	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0002	953	134	36	11	68	2	17	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0003	953	12	12	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0004	953	5	4	1	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0005	953	3	3	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0006	953	2	2	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0007	953	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0008	953	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0009	953	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0010	953	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	a0011	953	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD2_chr16_50688606_50738075	1/1	a0001	1013	249	72	47	97	10	21	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0002	1013	18	2	10	1	1	4	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0003	1013	10	0	6	0	4	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0004	1013	6	6	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0005	1013	5	5	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0006	1013	3	3	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0007	1013	3	3	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0008	1013	3	0	2	0	0	1	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0009	1013	2	2	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0010	1013	2	0	2	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0011	1013	2	2	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0012	1013	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0013	1013	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0014	1013	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0015	1013	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0016	1013	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0017	1013	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0018	1013	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0019	1013	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	a0020	1013	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NODAL_chr10_70426936_70446681	0/1	a0001	347	318	44	51	182	7	33	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	1/0	a0002	347	111	48	31	13	7	11	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	a0003	347	4	4	0	0	0	0	copy fasta	NODAL	chr10	70426936	70446681