JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NODAL_chr10_70426936_70446681	0/0	a0004	347	1	0	0	1	0	0	copy fasta	NODAL	chr10	70426936	70446681
NOG_chr17_56588699_56600611	1/1	a0001	232	353	83	70	144	14	40	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	a0002	232	3	3	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOL10_chr2_10565754_10694975	1/1	a0001	688	310	76	60	130	8	34	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0002	688	46	1	13	24	2	6	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0003	688	10	9	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0004	688	2	2	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0005	688	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0006	688	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0007	688	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	a0008	688	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL11_chr17_67712936_67749531	1/1	a0001	719	317	79	64	125	10	37	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0002	719	55	0	2	52	0	1	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0003	719	10	9	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0004	719	3	3	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0005	719	2	0	0	2	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0006	719	2	2	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0007	719	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0008	719	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0009	360	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0010	719	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	a0011	719	1	0	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL12_chr22_37681343_37698474	1/1	a0001	213	412	87	68	197	16	42	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	a0002	213	8	6	2	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	a0003	213	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	a0004	213	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	a0005	213	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL3_chr16_67165538_67180737	1/1	a0001	208	294	94	59	92	10	37	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	a0002	208	2	0	0	2	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	a0003	208	2	0	1	0	0	1	copy fasta	NOL3	chr16	67165538	67180737
NOL4L_chr20_32438059_32590333	1/1	a0001	680	196	80	52	28	6	28	copy fasta	NOL4L	chr20	32438059	32590333
NOL4_chr18_33846100_34229913	1/1	a0001	638	168	54	28	62	8	14	copy fasta	NOL4	chr18	33846100	34229913
NOL6_chr9_33456353_33478924	1/1	a0001	1146	407	80	77	195	15	38	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0002	1146	6	6	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0003	1146	3	3	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0004	1146	3	0	0	0	0	3	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0005	1146	2	0	0	0	2	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0006	1146	2	0	0	2	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0007	1146	2	0	0	1	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0008	1146	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0009	1146	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0010	1146	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0011	1146	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0012	1146	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0013	1146	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0014	1146	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0015	1146	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0016	1146	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0017	1146	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0018	1146	1	0	0	0	1	0	copy fasta	NOL6	chr9	33456353	33478924