JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOL6_chr9_33456353_33478924	0/0	a0019	1146	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	a0020	1146	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL7_chr6_13610335_13626712	1/1	a0001	257	446	94	84	208	16	42	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	a0002	257	4	4	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	a0003	257	1	0	0	1	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	a0004	254	1	0	0	1	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL8_chr9_92292358_92330350	1/1	a0001	1167	346	71	67	158	13	35	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0002	1167	22	1	3	13	1	4	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0003	1167	12	10	2	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0004	1167	5	5	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0005	1167	3	0	0	3	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0006	1167	2	0	1	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0007	1167	2	2	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0008	1167	2	0	0	0	2	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0009	1167	2	0	0	0	2	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0010	1167	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0011	1167	1	0	0	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0012	1167	1	0	0	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0013	1167	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0014	1167	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0015	1167	1	0	1	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0016	1167	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0017	1167	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0018	1167	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0019	1167	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0020	1167	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	a0021	1167	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL9_chr1_6516347_6559513	0/1	a0001	702	219	40	54	94	8	22	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0002	702	93	42	9	34	2	6	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0003	702	7	3	0	2	0	2	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	1/0	a0004	702	7	6	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0005	702	6	0	0	6	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0006	702	3	2	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0007	698	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0008	702	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0009	702	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0010	702	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	a0011	702	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOLC1_chr10_102147389_102168870	1/1	a0001	699	339	41	61	186	14	35	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0002	699	53	39	9	0	2	3	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0003	699	7	6	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0004	699	3	3	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0005	699	1	1	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0006	699	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0007	699	1	0	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0008	699	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0009	699	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	a0010	699	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOM1_chr7_156944712_156978176	0/1	a0001	860	145	38	39	41	11	15	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	1/0	a0002	860	141	22	14	83	2	19	copy fasta	NOM1	chr7	156944712	156978176