JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOM1_chr7_156944712_156978176	0/0	a0003	860	79	6	16	45	5	7	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0004	860	11	0	0	11	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0005	860	10	0	0	10	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0006	859	8	7	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0007	860	7	7	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0008	860	5	5	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0009	860	3	3	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0010	860	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0011	860	2	0	2	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0012	860	2	0	0	0	0	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0013	860	2	0	0	0	0	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0014	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0015	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0016	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0017	860	1	0	0	0	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0018	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0019	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0020	860	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0021	860	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	a0022	860	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOMO1_chr16_14828721_14901157	0/1	a0001	1222	219	47	50	82	6	33	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0002	1222	57	3	0	45	1	8	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0003	1222	21	6	0	15	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0004	1222	12	3	8	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0005	1222	5	0	1	0	1	3	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0006	1222	5	0	2	3	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0007	1222	5	0	0	5	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0008	1222	2	2	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0009	1222	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0010	1222	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0011	1222	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0012	1222	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0013	1222	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0014	1222	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0015	1222	1	0	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0016	1222	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0017	1222	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0018	1222	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	a0019	1222	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO2_chr16_18494927_18567097	0/0	a0001	1222	11	1	1	1	0	8	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	a0002	1222	4	0	1	1	0	2	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	a0003	1222	1	1	0	0	0	0	copy fasta	NOMO2	chr16	18494927	18567097
NOMO3_chr16_16227528_16299811	0/0	a0001	1222	95	14	34	28	5	14	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0002	1222	17	3	5	5	2	2	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0003	1222	4	0	3	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0004	707	3	0	1	0	1	1	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0005	1222	2	2	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0006	1222	2	0	1	0	0	1	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0007	1222	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0008	379	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811