JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOMO3_chr16_16227528_16299811	0/0	a0009	1222	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0010	1222	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0011	1222	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0012	1222	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0013	1222	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0014	1227	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	a0015	1222	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NONO_chrX_71278635_71306168	1/1	a0001	471	227	55	42	93	7	28	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	a0002	471	1	1	0	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	a0003	471	1	0	1	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NOP10_chr15_34336719_34348136	1/0	a0001	64	449	98	78	210	16	46	copy fasta	NOP10	chr15	34336719	34348136
NOP14_chr4_2932936_2968406	1/0	a0001	857	253	32	45	136	8	31	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0002	857	123	49	27	26	10	11	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0003	857	10	8	2	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0004	857	4	0	0	4	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0005	857	3	0	1	0	0	2	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0006	857	3	0	0	3	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0007	857	3	2	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0008	857	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0009	857	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0010	857	2	1	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0011	857	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/1	a0012	857	2	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0013	857	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0014	857	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0015	857	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0016	857	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0017	804	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0018	857	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0019	857	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0020	857	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0021	381	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0022	857	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	a0023	857	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP16_chr5_176378946_176393598	1/1	a0001	178	433	98	74	197	18	44	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	a0002	178	1	0	0	1	0	0	copy fasta	NOP16	chr5	176378946	176393598
NOP2_chr12_6551871_6573291	1/1	a0001	812	386	76	73	174	16	45	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0002	812	12	0	0	12	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0003	812	9	9	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0004	812	8	7	1	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0005	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0006	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0007	812	1	0	0	0	0	1	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0008	812	1	1	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0009	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0010	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0011	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0012	812	1	1	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	a0013	812	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP53_chr19_47740546_47762058	0/0	a0001	478	222	45	42	89	13	33	copy fasta	NOP53	chr19	47740546	47762058