Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AQP7_chr9_33378191_33407568	0/0	a0002	342	20	19	1	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0003	342	12	0	3	7	1	1	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0004	342	7	0	0	6	1	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0005	342	4	0	0	4	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0006	342	3	0	0	3	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0007	342	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0008	342	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0009	342	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	a0010	342	1	0	0	0	0	1	copy fasta	AQP7	chr9	33378191	33407568
AQP8_chr16_25211947_25233932	1/1	a0001	261	231	58	41	94	8	28	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0002	261	178	37	31	89	4	17	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0003	261	6	0	4	0	1	1	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0004	261	1	0	1	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0005	261	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0006	261	1	0	0	1	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0007	261	1	0	0	0	1	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	a0008	261	1	0	1	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP9_chr15_58133381_58190911	0/1	a0001	295	354	64	72	160	16	41	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	1/0	a0002	295	58	24	4	25	2	2	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	a0003	295	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	a0004	295	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	a0005	295	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	a0006	295	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQR_chr15_34846782_34974742	1/1	a0001	1485	283	64	44	138	8	27	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0002	1485	20	19	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0003	1485	2	1	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0004	1485	2	2	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0005	1485	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0006	1485	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0007	1485	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0008	1485	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	a0009	1485	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
ARAF_chrX_47556205_47576908	1/1	a0001	606	310	76	54	139	11	28	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0002	606	3	0	0	2	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0003	192	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0004	308	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0005	606	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0006	241	1	0	0	0	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	a0007	91	1	0	0	0	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAP1_chr11_72680069_72757408	1/0	a0001	1450	249	63	56	94	8	27	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0002	1450	68	24	15	19	2	8	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0003	1450	14	0	3	11	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0004	1450	3	3	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0005	1450	3	0	0	3	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0006	1450	2	0	0	2	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0007	1450	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0008	1450	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0009	1450	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/1	a0010	1450	1	0	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0011	1450	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408