JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOP53_chr19_47740546_47762058	1/1	a0002	478	124	14	22	74	3	9	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0003	478	23	18	5	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0004	478	9	9	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0005	478	5	5	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0006	478	4	4	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0007	478	4	0	0	2	0	2	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0008	478	3	3	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0009	478	2	0	2	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0010	478	2	0	0	0	0	2	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0011	478	2	0	0	2	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0012	478	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0013	478	1	0	1	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0014	478	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	a0015	88	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP56_chr20_2647632_2663393	1/1	a0001	594	299	37	54	156	15	35	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0002	594	77	47	20	3	2	5	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0003	594	64	2	10	46	1	5	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0004	594	5	5	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0005	594	1	0	0	1	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0006	594	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	a0007	594	1	0	0	0	0	1	copy fasta	NOP56	chr20	2647632	2663393
NOP58_chr2_202260763_202308661	1/1	a0001	529	306	80	69	107	12	36	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	a0002	529	1	0	1	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	a0003	529	1	0	0	1	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP9_chr14_24294850_24314124	1/1	a0001	636	216	29	22	135	7	21	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0002	638	88	17	20	31	5	15	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0003	637	47	12	25	0	4	6	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0004	637	35	16	5	11	0	3	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0005	637	6	6	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0006	636	4	0	0	4	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0007	638	3	3	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0008	636	2	0	0	2	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0009	637	2	2	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0010	637	2	1	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0011	638	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0012	637	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0013	636	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0014	636	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0015	636	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0016	636	1	0	0	0	0	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0017	636	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0018	638	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	a0019	637	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOPCHAP1_chr12_104981316_105022625	1/1	a0001	185	214	28	50	90	10	34	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	a0002	185	181	54	16	97	4	10	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	a0003	185	39	8	2	29	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	a0004	185	4	0	0	4	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	a0005	185	2	0	2	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	a0006	185	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOS1AP_chr1_162064691_162375475	1/1	a0001	506	180	72	40	50	2	14	copy fasta	NOS1AP	chr1	162064691	162375475