JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOS1AP_chr1_162064691_162375475	0/0	a0002	506	2	2	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1_chr12_117203142_117366626	1/1	a0001	1434	281	85	48	107	10	29	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0002	1434	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0003	1434	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0004	1434	1	1	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0005	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0006	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0007	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0008	1434	1	0	0	0	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0009	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0010	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0011	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	a0012	1434	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS2_chr17_27751766_27805529	1/0	a0001	1153	321	65	54	156	15	30	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/1	a0002	1153	58	12	16	18	3	8	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0003	1153	14	9	2	1	0	2	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0004	1153	3	0	0	3	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0005	1153	1	0	1	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0006	1153	1	0	0	1	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0007	1153	1	0	1	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0008	1153	1	1	0	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0009	1153	1	1	0	0	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS2_chr17_27751766_27805529	0/0	a0010	2	1	0	0	1	0	0	copy fasta	NOS2	chr17	27751766	27805529
NOS3_chr7_150986017_151019588	0/1	a0001	1203	308	77	50	139	8	33	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	1/0	a0002	1203	47	3	18	17	3	5	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0003	1203	7	6	1	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0004	1203	3	3	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0005	1203	3	1	2	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0006	1203	2	0	0	2	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0007	1203	2	0	0	2	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0008	1203	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0009	241	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0010	1203	1	0	0	1	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0011	1203	1	0	0	1	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0012	1203	1	0	1	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0013	1203	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0014	1203	1	0	0	0	0	1	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0015	1203	1	1	0	0	0	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0016	1203	1	0	0	0	1	0	copy fasta	NOS3	chr7	150986017	151019588
NOS3_chr7_150986017_151019588	0/0	a0017	1203	1	0	0	0	0	1	copy fasta	NOS3	chr7	150986017	151019588
NOSIP_chr19_49550468_49585556	0/0	a0000	0	12	7	4	1	0	0	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	1/1	a0001	301	291	88	58	91	12	40	copy fasta	NOSIP	chr19	49550468	49585556
NOSIP_chr19_49550468_49585556	0/0	a0002	301	1	1	0	0	0	0	copy fasta	NOSIP	chr19	49550468	49585556
NOSTRIN_chr2_168797637_168870514	0/1	a0001	506	277	79	48	99	11	39	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	1/0	a0002	506	38	3	15	15	3	1	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	a0003	506	9	8	1	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	a0004	506	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	a0005	506	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOTCH1_chr9_136489433_136551048	1/1	a0001	2555	285	69	61	98	12	43	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	a0002	2555	7	0	7	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048