JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOTCH2NLC_chr1_149385621_149476833	0/0	a0021	310	2	0	0	2	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0022	313	2	0	0	2	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0023	287	1	0	0	0	0	1	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0024	289	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0025	295	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0026	298	1	1	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0027	299	1	1	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0028	299	1	1	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0029	300	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0030	301	1	1	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0031	311	1	1	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0032	312	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0033	314	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	a0034	315	1	0	0	1	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLR_chr1_120718945_120799851	0/0	a0001	274	119	2	16	84	5	12	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	1/1	a0002	274	34	0	2	21	1	8	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0003	274	3	0	2	0	0	1	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0004	274	2	0	0	2	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0005	274	2	0	0	2	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0006	274	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0007	273	1	0	0	0	0	1	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0008	274	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	a0009	274	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2_chr1_119906553_120074662	1/1	a0001	2471	155	72	22	28	5	26	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0002	2471	2	0	0	0	0	2	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0003	2471	2	1	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0004	2471	2	2	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0005	2471	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0006	2471	1	0	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0007	2471	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0008	2471	1	0	0	0	1	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0009	2471	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0010	2471	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	a0011	2471	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH3_chr19_15154038_15205995	0/1	a0001	2321	145	16	36	61	11	20	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	1/0	a0002	2321	121	22	24	60	2	12	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0003	2321	33	31	1	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0004	2321	3	0	3	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0005	2321	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0006	2321	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0007	2321	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0008	2321	2	1	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0009	2321	2	2	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0010	2321	2	2	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0011	2321	2	0	0	2	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0012	2321	2	0	0	2	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0013	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0014	2321	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0015	2321	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0016	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995