JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOTCH3_chr19_15154038_15205995	0/0	a0017	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0018	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0019	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0020	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0021	2321	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0022	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0023	2321	1	0	0	0	1	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0024	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0025	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0026	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0027	2321	1	0	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0028	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0029	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0030	2321	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	a0031	2321	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH4_chr6_32189843_32229067	0/0	a0001	2002	67	12	12	36	1	6	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0002	2003	59	5	21	23	2	8	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0003	1999	34	1	2	26	1	4	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0004	2002	33	17	5	8	0	3	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0005	2003	29	2	1	24	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0006	2002	25	11	3	11	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0007	2004	20	7	1	12	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0008	2002	18	4	6	6	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0009	2003	15	0	0	15	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0010	2002	12	0	0	10	1	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0011	2005	12	3	3	0	2	4	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/1	a0012	2004	10	0	6	1	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0013	1999	9	1	0	8	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0014	2005	7	2	5	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0015	2002	6	0	0	6	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0016	2002	6	0	0	1	0	5	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0017	2002	5	5	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0018	2003	5	1	4	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0019	1999	4	2	1	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0020	2002	4	0	2	0	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0021	2003	4	0	1	0	0	3	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0022	2006	4	0	0	2	1	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0023	1999	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0024	2002	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0025	2002	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0026	2003	3	1	1	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0027	2003	3	2	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0028	2004	3	1	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0029	1998	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0030	2002	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0031	2002	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0032	2002	2	0	0	0	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0033	2002	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0034	2004	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0035	1999	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067