JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOTCH4_chr6_32189843_32229067	0/0	a0036	1999	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0037	1999	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0038	1999	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0039	2002	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0040	2002	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0041	2002	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0042	2002	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0043	2002	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0044	2002	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0045	2002	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0046	2003	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0047	2003	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0048	2003	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0049	2003	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0050	2004	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0051	2004	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0052	2005	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	a0053	2005	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTO_chr2_73197574_73217513	1/1	a0001	251	269	79	56	84	13	35	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0002	251	98	10	15	63	3	7	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0003	251	4	3	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0004	251	3	2	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0005	251	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0006	251	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0007	251	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0008	251	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0009	251	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	a0010	251	1	0	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTUM_chr17_81947507_81966187	1/1	a0001	496	361	73	70	157	18	41	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0002	496	13	12	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0003	496	2	0	0	2	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0004	496	1	0	0	0	0	1	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0005	496	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0006	496	1	0	0	1	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0007	496	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0008	496	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0009	72	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0010	496	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	a0011	91	1	0	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOVA1_chr14_26438090_26603033	1/1	a0001	507	244	86	30	104	6	16	copy fasta	NOVA1	chr14	26438090	26603033
NOVA2_chr19_45928734_45978865	1/1	a0001	492	399	91	72	184	12	38	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	a0002	492	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	a0003	492	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	a0004	492	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOX1_chrX_100838324_100879359	1/1	a0001	564	290	64	51	130	11	32	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	a0002	564	7	6	1	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	a0003	564	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	a0004	564	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	a0005	564	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	a0006	564	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359