JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOX1_chrX_100838324_100879359	0/0	a0007	564	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX3_chr6_155390368_155460839	1/1	a0001	568	260	82	60	78	10	28	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0002	568	89	6	12	60	0	11	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0003	568	5	0	0	5	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0004	568	2	2	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0005	568	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0006	568	1	0	0	0	0	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0007	568	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0008	568	1	1	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0009	568	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	a0010	568	1	1	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX4_chr11_89319353_89496375	0/1	a0001	578	281	77	52	114	16	21	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	a0002	578	2	2	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	a0003	578	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	a0004	578	1	0	0	1	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	a0005	578	1	0	0	1	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	a0006	578	1	0	0	0	0	1	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	1/0	a0007	578	1	0	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX5_chr15_69009695_69067762	1/0	a0001	765	225	51	30	109	6	28	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/1	a0002	765	71	11	18	21	8	12	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0003	765	60	9	4	46	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0004	765	13	0	5	7	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0005	299	9	9	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0006	765	5	0	0	5	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0007	299	2	2	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0008	765	2	2	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0009	765	2	0	0	2	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0010	765	2	0	2	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0011	765	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0012	765	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0013	765	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0014	765	1	0	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	a0015	765	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOXA1_chr9_137418393_137439406	1/0	a0001	476	292	75	59	120	10	27	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/1	a0002	476	74	6	7	42	5	13	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0003	476	15	6	4	1	1	3	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0004	476	6	0	2	3	0	1	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0005	476	6	6	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0006	476	2	0	0	2	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0007	476	2	2	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0008	476	2	0	2	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0009	476	2	0	2	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0010	476	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0011	476	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	a0012	476	1	1	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXO1_chr16_1973917_1986469	1/1	a0001	371	382	91	60	180	15	34	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0002	371	46	1	19	9	2	15	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0003	371	2	0	0	2	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0004	371	2	2	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0005	5	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469