JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NOXO1_chr16_1973917_1986469	0/0	a0006	371	1	0	1	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0007	371	1	0	0	0	0	1	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0008	371	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0009	371	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0010	371	1	0	0	0	1	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0011	371	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0012	371	1	1	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0013	371	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	a0014	371	1	1	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXRED1_chr14_77389021_77428523	1/1	a0001	359	297	88	67	88	12	40	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	a0002	359	1	0	1	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NPAP1_chr15_24670775_24688393	0/0	a0001	1156	140	39	15	74	5	7	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/1	a0002	1156	122	3	16	85	6	11	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	1/0	a0003	1156	63	6	25	11	5	15	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0004	1156	52	8	14	25	1	4	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0005	1156	14	14	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0006	1156	8	0	0	8	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0007	1156	6	6	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0008	1156	5	5	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0009	1156	5	0	5	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0010	1156	3	3	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0011	1156	3	0	0	0	1	2	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0012	1156	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0013	1156	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0014	1156	2	0	0	2	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0015	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0016	1156	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0017	1156	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0018	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0019	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0020	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0021	1156	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0022	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0023	1156	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0024	1156	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0025	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0026	1156	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0027	1156	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0028	1156	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0029	1156	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0030	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	a0031	1156	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAS1_chr19_47014837_47050775	1/1	a0001	590	411	97	75	173	18	46	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0002	590	2	0	0	0	0	2	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0003	590	1	1	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0004	590	1	0	1	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0005	590	1	0	0	0	0	1	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0006	590	1	0	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	a0007	590	1	0	0	0	0	1	copy fasta	NPAS1	chr19	47014837	47050775
NPAS2_chr2_100815139_101001829	0/0	a0001	824	211	63	26	99	7	16	copy fasta	NPAS2	chr2	100815139	101001829