JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPAS2_chr2_100815139_101001829	1/1	a0002	824	55	8	10	24	3	8	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0003	824	10	2	1	1	1	5	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0004	824	3	3	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0005	824	2	2	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0006	824	2	2	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0007	824	1	0	0	0	1	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0008	824	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0009	824	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0010	824	1	0	1	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	a0011	824	1	0	0	0	0	1	copy fasta	NPAS2	chr2	100815139	101001829
NPAS3_chr14_32933879_33809173	1/1	a0001	933	75	48	14	2	3	6	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	a0002	933	16	13	2	0	1	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	a0003	9	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS4_chr11_66416035_66431707	1/1	a0001	802	409	88	76	191	16	36	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0002	802	7	0	0	7	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0003	802	2	0	0	0	2	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0004	802	2	0	0	2	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0005	333	1	0	1	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0006	802	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0007	802	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	a0008	802	1	0	1	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAT_chr11_108152215_108227638	0/0	a0001	1427	188	48	30	79	8	23	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	1/0	a0002	1427	88	25	14	39	0	9	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0003	1427	33	0	5	27	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0004	1427	15	13	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0005	1427	7	1	0	1	2	3	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/1	a0006	1427	3	0	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0007	1427	3	0	2	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0008	1427	2	0	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0009	1427	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0010	1427	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0011	1427	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0012	1427	1	0	1	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0013	1427	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0014	1427	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0015	1427	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0016	1427	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0017	1427	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0018	1427	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	a0019	1427	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPBWR1_chr8_52934182_52948734	1/1	a0001	328	371	86	71	172	11	29	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	a0002	328	42	0	6	24	1	11	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	a0003	328	2	2	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	a0004	328	1	0	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR2_chr20_64098802_64112565	0/1	a0001	333	317	89	61	109	13	44	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	a0002	333	29	0	7	15	3	4	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	a0003	333	6	0	0	6	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	a0004	333	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	a0005	333	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	a0006	333	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565