JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPB_chr17_81897238_81907905	1/1	a0001	125	295	80	53	108	8	44	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	a0002	125	1	0	1	0	0	0	copy fasta	NPB	chr17	81897238	81907905
NPC1L1_chr7_44507535_44546330	1/1	a0001	1332	281	54	55	120	18	32	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0002	1332	8	8	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0003	1332	5	5	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0004	1332	5	3	2	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0005	1332	2	0	0	2	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0006	1332	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0007	1332	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0008	1332	2	1	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0009	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0010	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0011	1332	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0012	1332	1	0	0	0	0	1	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0013	1332	1	0	0	0	0	1	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0014	1013	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0015	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0016	1332	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0017	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0018	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0019	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0020	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	a0021	1332	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1_chr18_23526442_23591506	0/1	a0001	1278	106	39	8	43	0	15	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0002	1278	71	19	9	42	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0003	1278	68	10	13	32	3	10	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0004	1278	61	1	14	38	4	4	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	1/0	a0005	1278	47	7	13	14	5	7	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0006	1278	5	5	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0007	1278	4	4	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0008	1278	3	3	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0009	1278	2	1	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0010	1278	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0011	1278	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0012	1278	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0013	1278	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0014	1278	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0015	1278	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0016	1278	1	0	0	0	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0017	1278	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0018	1278	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0019	1278	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	a0020	87	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC2_chr14_74474940_74498305	1/1	a0001	151	410	90	70	190	16	42	copy fasta	NPC2	chr14	74474940	74498305
NPDC1_chr9_137034463_137051177	1/1	a0001	325	393	83	79	175	9	45	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0002	325	2	0	2	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0003	325	1	1	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0004	325	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0005	325	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0006	325	1	0	0	0	1	0	copy fasta	NPDC1	chr9	137034463	137051177