Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCC3_chr17_50629881_50697253	0/0	a0009	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0010	1527	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0011	1527	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0012	726	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0013	1527	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0014	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0015	1244	1	0	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0016	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0017	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0018	1527	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0019	1527	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0020	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0021	1527	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0022	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0023	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0024	1527	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	a0025	1527	1	0	0	0	1	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC4_chr13_95014835_95306451	1/1	a0001	1325	156	57	33	44	8	12	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0002	1325	45	21	3	14	0	7	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0003	1325	12	0	0	12	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0004	1325	11	0	1	9	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0005	1325	6	0	0	6	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0006	1325	4	0	1	0	0	3	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0007	1325	3	1	2	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0008	1325	2	0	0	1	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0009	1325	1	0	0	1	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0010	1325	1	0	0	0	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0011	1325	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0012	1325	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0013	1325	1	0	0	0	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0014	1325	1	0	0	1	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0015	1325	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0016	1325	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	a0017	1325	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC5_chr3_183914934_184022884	1/1	a0001	1437	370	88	63	164	14	39	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0002	1437	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0003	1437	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0004	1437	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0005	1437	1	0	0	1	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0006	1016	1	0	0	0	0	1	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0007	1437	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0008	1437	1	0	1	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	0/0	a0009	1437	1	1	0	0	0	0	copy fasta	ABCC5	chr3	183914934	184022884
ABCC6_chr16_16144565_16228494	0/1	a0001	1503	177	21	31	91	4	29	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0002	1503	45	17	12	12	2	2	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0003	1503	32	2	11	10	5	4	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0004	1503	12	4	0	4	4	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0005	1503	9	1	2	5	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0006	1503	7	0	3	4	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	a0007	1503	7	6	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494