Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARAP1_chr11_72680069_72757408	0/0	a0012	1450	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0013	1450	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0014	1450	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0015	1450	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0016	1450	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0017	1450	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0018	1450	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0019	1450	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0020	1450	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	a0021	1450	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP2_chr4_36061004_36249514	0/1	a0001	1704	243	66	57	78	14	27	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0002	1704	8	8	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0003	1704	5	0	0	5	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0004	1704	4	0	0	4	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0005	1704	2	0	0	2	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	1/0	a0006	1704	2	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0007	1704	2	1	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0008	1704	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0009	1704	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0010	1704	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0011	1704	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0012	1704	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0013	1704	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0014	1704	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0015	1704	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0016	1704	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0017	1704	1	0	0	1	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0018	1704	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	a0019	1704	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP3_chr5_141648402_141687230	1/1	a0001	1544	340	88	58	145	13	34	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0002	1544	35	3	7	18	1	6	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0003	1544	7	0	5	0	2	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0004	1544	5	0	0	5	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0005	1544	3	2	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0006	1544	3	0	0	0	0	3	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0007	1544	3	0	0	3	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0008	1544	3	3	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0009	1540	2	0	2	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0010	1544	2	2	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0011	1544	2	0	0	0	0	2	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0012	1544	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0013	1544	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0014	1544	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0015	1544	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0016	1544	1	0	0	0	0	1	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0017	1544	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0018	1544	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0019	1544	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0020	1544	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	a0021	1137	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230