JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPDC1_chr9_137034463_137051177	0/0	a0007	325	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0008	325	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	a0009	325	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPEPL1_chr20_58687800_58720844	0/0	a0001	523	217	67	33	83	8	26	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	1/1	a0002	523	169	16	42	83	4	22	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	a0003	523	11	10	1	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	a0004	523	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPPS_chr17_47526108_47628276	1/0	a0001	919	336	70	58	155	14	38	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/1	a0002	919	2	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	a0003	919	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	a0004	919	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	a0005	919	1	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	a0006	919	1	0	0	1	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPFFR1_chr10_70242329_70289004	1/1	a0001	430	282	62	66	99	13	40	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0002	430	57	30	7	16	0	4	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0003	430	11	0	0	9	1	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0004	430	6	5	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0005	430	5	0	0	5	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0006	430	3	3	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0007	430	2	0	2	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0008	430	1	0	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	a0009	430	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR2_chr4_72027000_72153305	1/1	a0001	420	335	76	55	156	10	36	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0002	420	4	4	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0003	420	1	0	1	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0004	420	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0005	420	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0006	420	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	a0007	420	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFF_chr12_53501688_53512484	1/1	a0001	113	325	80	70	109	16	48	copy fasta	NPFF	chr12	53501688	53512484
NPFF_chr12_53501688_53512484	0/0	a0002	113	11	6	0	5	0	0	copy fasta	NPFF	chr12	53501688	53512484
NPFF_chr12_53501688_53512484	0/0	a0003	113	2	2	0	0	0	0	copy fasta	NPFF	chr12	53501688	53512484
NPHP1_chr2_110118348_110210013	1/1	a0001	677	311	76	51	135	10	37	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	a0002	677	6	6	0	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	a0003	677	3	0	0	0	2	1	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	a0004	677	1	0	0	1	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	a0005	677	1	0	1	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP3_chr3_132675609_132727409	1/1	a0001	1330	312	78	51	144	10	27	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0002	1330	13	12	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0003	1330	3	3	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0004	1330	3	0	0	3	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0005	1330	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0006	1330	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0007	1330	2	0	0	0	0	2	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0008	1330	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0009	1330	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0010	605	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0011	1330	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	a0012	1330	1	0	0	0	0	1	copy fasta	NPHP3	chr3	132675609	132727409
NPHP4_chr1_5857811_5997425	0/0	a0001	1426	176	50	41	48	8	29	copy fasta	NPHP4	chr1	5857811	5997425