JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPHP4_chr1_5857811_5997425	0/0	a0002	1426	8	8	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0003	1426	4	4	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0004	1426	3	0	1	0	0	2	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0005	1426	3	0	0	3	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0006	1426	2	0	0	0	0	2	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0007	1426	2	2	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0008	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0009	1426	1	0	0	0	0	1	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0010	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0011	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0012	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0013	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0014	1426	1	0	1	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0015	1426	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0016	1426	1	0	1	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	a0017	1426	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHS1_chr19_35820372_35857504	1/1	a0001	1241	179	53	34	56	7	27	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0002	1241	111	5	27	63	7	9	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0003	1241	18	9	3	1	2	3	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0004	1241	12	12	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0005	1241	7	0	7	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0006	1241	6	0	0	5	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0007	1241	6	0	0	6	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0008	1241	4	0	0	4	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0009	1241	4	0	0	4	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0010	1241	3	2	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0011	1241	3	2	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0012	1241	3	0	0	3	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0013	1241	2	0	0	2	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0014	1241	2	1	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0015	1241	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0016	1241	2	0	0	0	0	2	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0017	1241	2	1	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0018	1241	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0019	1241	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0020	1241	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0021	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0022	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0023	1241	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0024	1241	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0025	1241	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0026	1241	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0027	1241	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0028	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0029	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0030	1241	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0031	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0032	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0033	1241	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	a0034	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504