JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPHS1_chr19_35820372_35857504	0/0	a0035	1241	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS2_chr1_179545539_179580948	1/1	a0001	383	408	84	74	187	17	44	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0002	383	11	9	2	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0003	383	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0004	383	1	0	0	0	1	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0005	383	1	0	0	1	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0006	383	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	a0007	383	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPIPA1_chr16_14932443_14957056	0/1	a0001	350	120	29	18	57	3	12	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0002	369	84	8	13	48	2	13	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0003	350	26	5	4	14	0	3	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0004	369	9	5	1	3	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0005	369	3	0	3	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0006	327	2	0	0	2	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0007	369	2	0	0	2	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0008	350	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0009	350	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0010	369	1	0	0	0	1	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0011	392	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0012	411	1	0	0	1	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0013	369	1	1	0	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	a0014	369	1	0	0	1	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA2_chr16_14737533_14770462	0/0	a0001	369	114	38	20	43	5	8	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0002	369	42	6	5	20	3	8	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/1	a0003	369	38	5	9	12	2	9	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0004	369	3	3	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0005	369	2	2	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0006	369	2	0	0	0	0	2	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0007	411	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0008	369	1	0	0	0	0	1	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0009	369	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	a0010	369	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA3_chr16_14698411_14731342	0/0	a0001	369	21	11	0	6	2	2	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	a0002	369	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	a0003	388	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	a0004	369	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA5_chr16_15358628_15383294	0/0	a0000	0	84	5	11	61	1	6	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0001	350	172	27	25	83	10	27	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0002	369	57	1	14	35	0	7	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0003	350	29	27	2	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0004	350	27	4	17	0	3	3	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0005	350	25	9	1	13	0	2	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0006	350	13	0	6	1	4	2	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0007	350	3	3	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0008	350	2	2	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0009	350	2	0	0	2	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0010	369	2	1	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0011	350	2	0	2	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0012	350	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0013	350	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294