JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB13_chr16_30217897_30253479	0/0	a0027	1096	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0028	1096	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0029	1096	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0030	1222	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0031	1222	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0032	1138	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0033	1138	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0034	1306	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0035	1222	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	1/0	a0036	1138	1	0	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0037	1180	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0038	1054	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0039	1100	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0040	1184	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0041	1100	1	0	0	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0042	1016	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0043	1058	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0044	1058	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0045	1016	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0046	1100	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0047	1142	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0048	1100	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0049	1350	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0050	975	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0051	492	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0052	1142	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0053	1226	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0054	1213	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0055	1039	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0056	1100	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0057	1180	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0058	1203	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0059	1077	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0060	1161	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0061	1138	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB15_chr16_74371306_74397115	0/0	a0000	0	3	0	1	2	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0001	443	93	8	14	61	0	10	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	1/0	a0002	443	57	11	12	27	0	6	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0003	443	41	11	4	25	1	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0004	438	41	7	9	22	1	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0005	443	6	2	3	0	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0006	443	4	4	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0007	443	3	0	0	3	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0008	443	2	0	0	0	0	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0009	443	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0010	422	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0011	443	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0012	443	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0013	443	1	0	0	0	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0014	328	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115