JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB15_chr16_74371306_74397115	0/0	a0015	443	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0016	443	1	1	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	a0017	443	1	0	1	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB2_chr16_11922373_11947045	0/1	a0001	133	272	26	59	136	17	33	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0002	133	121	51	21	40	1	8	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	1/0	a0003	397	12	11	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0004	383	2	2	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0005	133	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0006	133	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0007	397	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0008	397	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0009	382	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0010	132	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	a0011	133	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB4_chr16_21829582_21862756	0/0	a0001	1138	21	0	12	1	2	6	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0002	1096	17	0	4	11	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0003	1180	13	0	0	7	1	5	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0004	1180	12	0	4	5	0	3	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0005	970	11	1	2	8	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0006	1096	8	8	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0007	1180	7	0	4	3	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0008	1138	6	0	5	0	1	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0009	928	5	0	0	5	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0010	1096	4	0	2	0	1	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0011	1109	4	0	2	0	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0012	1138	4	2	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0013	1096	3	2	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0014	1054	3	3	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0015	1050	2	0	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0016	1180	2	2	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0017	1180	2	0	0	2	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0018	1096	2	1	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0019	1138	2	0	0	2	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0020	1054	2	1	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0021	1054	2	0	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0022	1096	2	2	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0023	1054	2	0	1	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0024	1012	2	0	1	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0025	1096	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0026	1180	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0027	1138	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0028	1245	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0029	1096	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0030	1180	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0031	1138	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0032	1096	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0033	1054	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0034	1138	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0035	1119	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0036	1016	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756