Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARAP3_chr5_141648402_141687230	0/0	a0022	1544	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARCN1_chr11_118567409_118608033	1/1	a0001	511	367	90	66	158	14	37	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	a0002	511	1	0	0	0	0	1	copy fasta	ARCN1	chr11	118567409	118608033
ARC_chr8_142606049_142619479	1/1	a0001	396	407	96	76	171	16	46	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	a0002	234	10	0	2	8	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	a0003	396	2	0	0	0	0	2	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	a0004	396	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
AREG_chr4_74440136_74460005	1/1	a0001	252	424	86	65	214	16	41	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	a0002	252	3	0	0	0	0	3	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	a0003	252	1	0	1	0	0	0	copy fasta	AREG	chr4	74440136	74460005
AREL1_chr14_74656256_74718080	1/1	a0001	823	361	89	67	161	12	30	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	a0002	823	7	0	0	7	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	a0003	823	4	4	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	a0004	823	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	a0005	823	1	0	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
ARF1_chr1_228077708_228104212	1/1	a0001	181	430	88	68	212	16	44	copy fasta	ARF1	chr1	228077708	228104212
ARF3_chr12_48930723_48962487	1/1	a0001	181	348	88	68	132	16	42	copy fasta	ARF3	chr12	48930723	48962487
ARF4_chr3_57566363_57602344	1/1	a0001	180	358	86	68	146	14	42	copy fasta	ARF4	chr3	57566363	57602344
ARF5_chr7_127583411_127596700	1/1	a0001	180	402	98	76	172	14	40	copy fasta	ARF5	chr7	127583411	127596700
ARF6_chr14_49888082_49902054	1/1	a0001	175	344	90	70	136	12	34	copy fasta	ARF6	chr14	49888082	49902054
ARFGAP1_chr20_63267813_63294790	1/1	a0001	406	322	83	63	127	12	35	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0002	197	12	3	5	3	0	1	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0003	406	2	0	0	0	2	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0004	406	2	1	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0005	406	2	0	0	2	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0006	406	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	a0007	406	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP2_chr11_47159301_47181879	1/1	a0001	521	240	22	51	130	4	31	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0002	521	122	49	27	23	7	16	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0003	521	3	3	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0004	521	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0005	521	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0006	521	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0007	521	1	0	0	0	1	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0008	521	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0009	521	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0010	521	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0011	521	1	0	0	0	0	1	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	a0012	521	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP3_chr22_42791502_42862273	0/0	a0001	516	242	63	46	96	8	29	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	1/1	a0002	516	86	4	15	47	3	15	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0003	516	8	8	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0004	516	7	0	0	7	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0005	516	5	5	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0006	516	5	4	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0007	516	3	1	1	0	1	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0008	516	2	0	0	0	2	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0009	516	2	2	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0010	516	1	0	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	a0011	516	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273