JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB4_chr16_21829582_21862756	0/0	a0087	970	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0088	808	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0089	932	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	a0090	970	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB5_chr16_22505891_22541535	1/0	a0001	1133	12	0	0	7	2	2	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0002	1133	3	0	3	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0003	1129	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0004	1007	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0005	1213	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0006	1255	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0007	1255	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0008	965	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0009	1133	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0010	1049	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0011	1049	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0012	1133	1	0	0	0	1	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0013	1133	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0014	1133	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0015	1049	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0016	1133	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0017	1175	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0018	1259	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0019	1259	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0020	1217	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0021	1217	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0022	1133	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0023	1385	1	0	0	0	1	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0024	1179	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0025	1194	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0026	1091	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0027	1217	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0028	1133	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0029	1146	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0030	1217	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0031	375	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0032	1244	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0033	1137	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	a0034	1255	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB6_chr16_28337517_28368508	1/0	a0001	425	172	25	19	96	8	23	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0002	432	43	2	17	14	3	7	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0003	432	35	0	11	21	0	3	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0004	432	25	24	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0005	411	21	2	2	17	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0006	432	7	3	0	4	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0007	425	7	6	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0008	432	6	3	0	3	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0009	425	5	3	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0010	425	5	0	0	5	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0011	446	3	0	3	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0012	425	3	3	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508