JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB6_chr16_28337517_28368508	0/0	a0013	411	3	0	3	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0014	446	2	0	1	0	1	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0015	446	2	0	0	2	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0016	432	2	0	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0017	425	2	0	0	0	0	2	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0018	411	2	2	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0019	425	2	0	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0020	425	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0021	432	1	0	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0022	368	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0023	432	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0024	425	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0025	425	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0026	411	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0027	425	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0028	432	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0029	425	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0030	411	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0031	425	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0032	425	1	0	0	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	a0033	425	1	0	0	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB7_chr16_28451329_28477336	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	1/0	a0001	414	137	20	21	64	4	27	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0002	428	68	2	34	24	3	5	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0003	414	33	15	1	16	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0004	393	24	0	0	23	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0005	400	23	6	0	17	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0006	414	16	0	1	15	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0007	428	15	14	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0008	414	13	2	3	0	2	6	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0009	414	6	5	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0010	428	4	0	4	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0011	428	3	0	1	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0012	400	3	3	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0013	428	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0014	407	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0015	428	2	0	0	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0016	428	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0017	414	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0018	379	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0019	414	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0020	383	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0021	428	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0022	388	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0023	414	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0024	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0025	407	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0026	428	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0027	428	1	0	0	0	1	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/1	a0028	428	1	0	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336