JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB7_chr16_28451329_28477336	0/0	a0029	414	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0030	428	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0031	428	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0032	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0033	302	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0034	428	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0035	400	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0036	393	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0037	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0038	407	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0039	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0040	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	a0041	414	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB8_chr16_28633065_28663744	0/0	a0001	432	191	11	21	118	6	35	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0002	432	63	3	26	23	4	7	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	1/0	a0003	432	10	2	4	0	2	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0004	418	9	9	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0005	418	8	8	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0006	446	8	1	5	1	1	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0007	432	7	7	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0008	432	6	5	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0009	432	6	6	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0010	432	3	0	1	1	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0011	432	3	3	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0012	432	3	2	0	0	1	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0013	411	2	1	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0014	432	2	0	0	2	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0015	432	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0016	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0017	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0018	432	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0019	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0020	425	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0021	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0022	432	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0023	418	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0024	359	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0025	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0026	425	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0027	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0028	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0029	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0030	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0031	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0032	432	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0033	432	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0034	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0035	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0036	411	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0037	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744