JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB8_chr16_28633065_28663744	0/0	a0038	432	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0039	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0040	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0041	432	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0042	418	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0043	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	a0044	432	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB9_chr16_28746787_28777864	0/0	a0000	0	2	0	0	0	0	2	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0001	425	68	14	6	41	1	6	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	1/0	a0002	432	47	1	3	39	0	3	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0003	425	15	5	2	8	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0004	446	11	0	0	2	0	9	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0005	446	5	1	1	1	1	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0006	446	3	3	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0007	432	3	0	0	3	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0008	425	2	1	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0009	432	2	1	1	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0010	432	2	1	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0011	446	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0012	446	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0013	425	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0014	425	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0015	432	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0016	346	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0017	318	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0018	411	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0019	425	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0020	411	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0021	425	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0022	446	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0023	425	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0024	446	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0025	432	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	a0026	432	1	0	1	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPLOC4_chr17_81551887_81642112	1/1	a0001	608	341	83	78	120	16	42	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	a0002	608	3	3	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPL_chr1_182784773_182835384	1/1	a0001	320	323	94	58	125	14	30	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	a0002	320	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	a0003	320	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	a0004	320	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPM1_chr5_171382849_171415900	1/1	a0001	294	400	91	74	181	14	38	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	a0002	294	1	0	0	1	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	a0003	294	1	1	0	0	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM2_chr8_22019134_22041897	1/1	a0001	214	414	78	80	196	16	42	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	a0002	214	10	10	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	a0003	214	6	6	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	a0004	212	3	3	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	a0005	214	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM3_chr10_101776325_101788446	1/1	a0001	178	372	90	66	160	18	36	copy fasta	NPM3	chr10	101776325	101788446
NPNT_chr4_105890471_105976671	0/0	a0001	565	103	28	27	27	6	15	copy fasta	NPNT	chr4	105890471	105976671