JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPNT_chr4_105890471_105976671	0/1	a0002	565	84	21	11	31	6	14	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	1/0	a0003	565	27	17	6	0	2	1	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0004	565	6	6	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0005	565	4	4	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0006	565	2	2	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0007	565	2	2	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0008	565	2	1	1	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0009	565	2	0	0	2	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0010	565	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0011	565	1	0	1	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0012	565	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	a0013	565	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPPA_chr1_11840709_11852783	0/0	a0000	0	65	47	6	3	3	6	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	1/1	a0001	151	265	37	54	120	15	37	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	a0002	151	31	4	4	20	0	3	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	a0003	151	2	2	0	0	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	a0004	151	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	a0005	151	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	a0006	151	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPB_chr1_11852464_11863945	1/1	a0001	134	407	88	71	180	18	48	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	a0002	134	1	0	0	1	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	a0003	134	1	0	1	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	a0004	134	1	0	0	1	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPC_chr2_231916809_231931396	1/1	a0001	126	432	98	79	192	16	45	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	a0002	126	3	0	3	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	a0003	126	3	0	0	3	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	a0004	126	1	0	0	0	0	1	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	a0005	126	1	0	0	1	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPR1_chr1_153673688_153698992	1/1	a0001	1061	283	64	50	127	12	28	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0002	1061	31	18	6	0	2	5	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0003	1061	16	0	3	13	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0004	1061	7	3	0	2	0	2	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0005	1061	2	2	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0006	1061	2	2	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0007	1061	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0008	1061	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0009	1061	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0010	1061	1	0	0	0	0	1	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	a0011	1061	1	0	1	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR2_chr9_35786591_35814731	1/1	a0001	1047	414	88	74	200	12	38	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	a0002	1047	2	0	0	2	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR3_chr5_32706321_32796720	1/1	a0001	541	252	80	47	91	8	24	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	a0002	541	68	8	11	33	4	12	copy fasta	NPR3	chr5	32706321	32796720
NPRL2_chr3_50342330_50355775	1/1	a0001	380	358	86	70	156	14	30	copy fasta	NPRL2	chr3	50342330	50355775
NPRL3_chr16_80386_143673	1/1	a0001	569	332	74	61	148	10	37	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0002	569	5	3	0	0	0	2	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0003	569	5	4	0	0	0	1	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0004	569	2	2	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0005	569	2	2	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0006	569	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673