JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPRL3_chr16_80386_143673	0/0	a0007	569	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0008	569	1	0	1	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	a0009	569	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPSR1_chr7_34653218_34854978	0/0	a0001	371	60	19	13	15	6	7	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	1/1	a0002	371	52	10	7	27	1	5	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0003	371	42	11	8	17	2	4	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0004	371	31	15	6	8	1	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0005	371	24	10	5	2	0	7	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0006	371	23	1	3	18	1	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0007	371	5	5	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0008	371	5	0	4	0	1	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0009	371	4	2	0	2	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0010	371	2	2	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0011	371	2	0	1	0	0	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0012	286	2	2	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0013	371	2	2	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0014	371	1	0	0	0	0	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0015	371	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0016	371	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0017	371	1	0	0	1	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0018	371	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	a0019	371	1	0	1	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPS_chr10_127544309_127558540	1/1	a0001	89	403	67	72	209	12	41	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	a0002	89	55	32	5	15	0	3	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	a0003	89	5	0	1	0	2	2	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	a0004	89	1	1	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPTN_chr15_73555014_73638389	1/1	a0001	398	342	78	58	162	8	34	copy fasta	NPTN	chr15	73555014	73638389
NPTX1_chr17_80461834_80481607	1/1	a0001	432	408	87	67	205	13	34	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	a0002	432	24	1	11	1	5	6	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	a0003	432	4	4	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	a0004	432	2	2	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	a0005	432	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	a0006	432	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX2_chr7_98612285_98634869	1/1	a0001	431	405	98	64	185	18	38	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	a0002	431	5	0	0	0	0	5	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	a0003	431	1	0	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	a0004	431	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTXR_chr22_38813452_38849028	1/1	a0001	489	351	89	76	130	14	40	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	a0002	489	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	a0003	489	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	a0004	489	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPVF_chr7_25219570_25233486	1/0	a0001	196	225	71	46	79	7	21	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/1	a0002	196	152	9	21	101	4	16	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	a0003	195	63	14	9	30	1	9	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	a0004	196	8	0	4	0	4	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	a0005	196	2	0	0	2	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPW_chr16_2014785_2025755	1/0	a0001	113	271	42	62	119	9	38	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	a0002	113	96	35	7	51	1	2	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/1	a0003	113	25	4	11	0	6	3	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	a0004	113	19	17	2	0	0	0	copy fasta	NPW	chr16	2014785	2025755