JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPW_chr16_2014785_2025755	0/0	a0005	113	1	0	0	0	0	1	copy fasta	NPW	chr16	2014785	2025755
NPY1R_chr4_163318962_163337596	1/1	a0001	384	417	94	73	192	16	40	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	a0002	384	1	0	1	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY2R_chr4_155203636_155222076	1/1	a0001	381	464	95	85	219	18	45	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	a0002	381	1	0	0	1	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	a0003	381	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	a0004	381	1	0	0	0	0	1	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	a0005	381	1	0	1	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY4R2_chr10_47913662_47928524	0/0	a0001	375	155	31	16	96	6	6	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0002	375	106	25	22	41	4	14	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0003	375	4	4	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0004	375	2	0	0	2	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0005	375	2	0	0	2	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0006	375	2	2	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0007	375	1	0	0	0	0	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0008	375	1	0	0	0	0	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0009	375	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0010	375	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	a0011	375	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R_chr10_46456099_46470958	0/0	a0001	375	162	5	23	119	3	12	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	a0002	375	105	44	24	30	1	6	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	a0003	375	19	4	6	3	0	6	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	a0004	375	3	3	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	a0005	375	1	0	1	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY5R_chr4_163338892_163356934	1/1	a0001	445	440	94	70	220	12	42	copy fasta	NPY5R	chr4	163338892	163356934
NPY_chr7_24279190_24296862	1/1	a0001	97	475	92	84	234	14	49	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	a0002	97	1	0	0	0	0	1	copy fasta	NPY	chr7	24279190	24296862
NQO1_chr16_69704401_69731560	1/1	a0001	274	292	76	45	130	11	28	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0002	274	127	13	26	71	5	12	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0003	274	18	1	5	6	2	4	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0004	2	4	4	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0005	274	1	1	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0006	274	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	a0007	274	1	1	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO2_chr6_2994894_3024755	0/0	a0001	231	311	87	56	130	12	26	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	1/1	a0002	231	117	1	20	79	2	13	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0003	231	7	5	1	0	1	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0004	231	6	1	2	0	1	2	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0005	231	2	0	1	0	0	1	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0006	231	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0007	231	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	a0008	231	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NR0B1_chrX_30299206_30314390	1/1	a0001	470	312	74	61	135	13	27	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0002	470	3	0	0	3	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0003	183	2	0	1	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0004	470	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0005	262	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0006	423	1	0	1	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0007	387	1	0	0	0	0	1	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	a0008	183	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390