JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NR0B2_chr1_26906489_26918975	1/1	a0001	257	296	75	58	108	12	41	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	a0002	257	15	7	3	0	4	1	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	a0003	257	4	4	0	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	a0004	26	1	0	1	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR1D1_chr17_40087793_40105589	1/1	a0001	614	421	94	73	189	16	47	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0002	614	3	3	0	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0003	300	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0004	614	1	0	0	0	0	1	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0005	614	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0006	614	1	1	0	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0007	614	1	0	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	a0008	614	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D2_chr3_23940286_23985617	1/1	a0001	579	368	78	79	153	12	44	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0002	579	3	0	0	3	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0003	579	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0004	579	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0005	579	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0006	579	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0007	579	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0008	579	1	0	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0009	579	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	a0010	579	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1H2_chr19_50371457_50388388	0/1	a0001	461	349	94	68	128	15	43	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	1/0	a0002	460	19	0	4	9	1	4	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	a0003	461	3	3	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	a0004	461	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	a0005	453	1	0	0	0	0	1	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	a0006	461	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H3_chr11_47252996_47274033	1/1	a0001	447	356	90	76	130	16	42	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	a0002	447	7	0	0	7	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	a0003	447	4	4	0	0	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	a0004	447	1	0	0	1	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H4_chr12_100468866_100569414	1/1	a0001	476	300	74	42	138	11	33	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0002	476	2	2	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0003	476	1	1	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0004	476	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0005	476	1	0	0	0	0	1	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0006	476	1	0	0	0	1	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0007	476	1	1	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	a0008	476	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1I2_chr3_119777101_119823487	1/1	a0001	45	416	96	68	192	18	40	copy fasta	NR1I2	chr3	119777101	119823487
NR1I3_chr1_161224669_161243203	1/1	a0001	348	430	85	78	199	16	50	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0002	348	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0003	348	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0004	348	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0005	348	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0006	348	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	a0007	348	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR2C1_chr12_95015229_95078618	1/1	a0001	603	424	91	76	194	18	43	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	a0002	603	4	0	0	4	0	0	copy fasta	NR2C1	chr12	95015229	95078618