JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NR2C1_chr12_95015229_95078618	0/0	a0003	603	1	0	0	0	0	1	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	a0004	603	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C2AP_chr19_19196409_19208414	1/1	a0001	139	425	98	70	193	16	46	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	a0002	139	1	0	0	1	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2_chr3_14942583_15054273	1/1	a0001	596	307	84	65	108	10	38	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	a0002	596	1	0	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2E1_chr6_108161022_108193805	1/1	a0001	385	392	98	66	170	16	40	copy fasta	NR2E1	chr6	108161022	108193805
NR2E3_chr15_71805554_71823253	1/1	a0001	410	352	94	79	134	13	30	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0002	410	51	0	0	50	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0003	410	7	0	0	7	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0004	410	5	0	0	4	0	1	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0005	410	2	1	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0006	410	1	1	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0007	410	1	0	1	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0008	410	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0009	410	1	0	0	0	0	1	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0010	410	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0011	410	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	a0012	410	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2F1_chr5_93578222_93599611	1/1	a0001	423	294	92	58	92	14	36	copy fasta	NR2F1	chr5	93578222	93599611
NR2F2_chr15_96325700_96345258	1/1	a0001	414	446	100	82	200	16	46	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	a0002	414	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	a0003	414	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F6_chr19_17226883_17250919	1/1	a0001	404	411	96	81	171	16	45	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	a0002	404	2	0	1	0	0	1	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	a0003	404	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR3C1_chr5_143272934_143408686	1/1	a0001	777	261	83	44	94	15	23	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	a0002	777	3	3	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	a0003	777	1	0	0	0	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	a0004	777	1	0	0	0	0	1	copy fasta	NR3C1	chr5	143272934	143408686
NR3C2_chr4_148073764_148447414	0/1	a0001	984	133	56	29	34	4	9	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	1/0	a0002	984	26	7	5	11	0	2	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0003	984	5	1	0	4	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0004	984	2	2	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0005	984	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0006	984	1	0	0	0	0	1	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0007	984	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	a0008	984	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR4A1_chr12_52046442_52064503	1/1	a0001	598	389	71	68	187	18	43	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0002	598	24	24	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0003	598	2	0	2	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0004	598	2	0	2	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0005	18	1	0	0	1	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0006	195	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0007	598	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0008	598	1	0	0	0	0	1	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	a0009	598	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A2_chr2_156319437_156337721	1/0	a0001	598	385	76	68	188	10	42	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/1	a0002	598	1	0	0	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A3_chr9_99816885_99871891	1/1	a0001	626	160	41	26	71	4	16	copy fasta	NR4A3	chr9	99816885	99871891