JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NR4A3_chr9_99816885_99871891	0/0	a0002	626	116	32	25	43	4	12	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	a0003	626	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	a0004	626	1	0	1	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR5A1_chr9_124476236_124512399	1/1	a0001	461	220	14	54	101	10	39	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	a0002	461	134	82	4	42	0	6	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	a0003	71	1	0	0	0	0	1	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	a0004	461	1	0	0	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A2_chr1_200022710_200182415	1/1	a0001	541	274	81	57	84	10	40	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	a0002	541	5	5	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	a0003	541	4	4	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	a0004	541	1	0	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	a0005	541	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	a0006	541	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR6A1_chr9_124512275_124776311	1/1	a0001	480	231	79	20	97	6	27	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	a0002	480	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	a0003	480	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	a0004	480	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NRAP_chr10_113583714_113669041	0/0	a0001	1730	56	4	11	34	4	3	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0002	1730	28	3	1	18	0	6	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0003	1730	24	8	0	10	1	5	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0004	1730	20	4	2	10	0	4	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0005	1730	20	0	4	13	1	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0006	1730	14	1	8	5	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0007	1730	14	5	4	4	1	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0008	1730	14	0	4	7	2	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	1/0	a0009	1730	13	5	5	2	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0010	1730	12	1	9	1	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0011	1730	11	7	0	3	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0012	1730	10	0	3	5	0	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0013	1730	8	0	0	7	1	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/1	a0014	1730	8	2	2	0	0	3	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0015	1730	8	0	0	8	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0016	1730	8	3	2	3	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0017	1730	7	0	5	0	1	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0018	1730	7	3	0	3	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0019	1730	6	3	0	0	0	3	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0020	1730	6	1	4	0	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0021	155	5	5	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0022	1730	5	0	0	4	1	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0023	1730	4	0	1	2	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0024	1730	4	0	0	4	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0025	1730	3	0	0	3	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0026	1730	3	3	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0027	1730	3	3	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0028	1730	3	3	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0029	1730	3	3	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0030	1730	3	0	0	3	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0031	1730	3	0	0	2	1	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0032	1730	3	2	0	1	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	a0033	1730	3	3	0	0	0	0	copy fasta	NRAP	chr10	113583714	113669041