Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARFGEF1_chr8_67192658_67348781	1/1	a0001	1849	198	67	43	62	2	22	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	a0002	1849	6	0	0	6	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	a0003	1849	1	1	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	a0004	1849	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	a0005	1849	1	0	1	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	a0006	1849	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF2_chr20_48916711_49041693	1/1	a0001	1785	339	82	61	147	8	39	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0002	1785	6	0	1	5	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0003	1785	2	0	2	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0004	1785	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0005	1785	1	0	1	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0006	1785	1	0	1	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0007	1785	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	a0008	1785	1	0	0	0	0	1	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF3_chr6_138156939_138349663	1/0	a0001	2177	93	26	19	29	3	15	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/1	a0002	2177	75	29	6	30	1	8	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0003	2177	5	5	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0004	2177	2	0	0	2	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0005	2177	2	2	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0006	2177	2	2	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0007	2177	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0008	2177	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0009	2177	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0010	2177	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0011	2177	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0012	2177	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0013	2177	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0014	2177	1	0	0	0	0	1	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0015	2177	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0016	2177	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	a0017	2177	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFIP1_chr4_152774954_152917357	1/1	a0001	373	337	86	46	155	10	38	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	a0002	373	4	4	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	a0003	373	1	0	0	1	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP2_chr11_6471519_6486331	1/1	a0001	341	401	90	79	166	18	46	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	a0002	341	1	0	1	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFRP1_chr20_63693647_63712976	1/1	a0001	201	296	76	50	120	12	36	copy fasta	ARFRP1	chr20	63693647	63712976
ARG1_chr6_131568226_131589329	1/1	a0001	322	416	91	64	202	16	41	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	a0002	322	2	0	0	2	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	a0003	322	1	0	0	0	0	1	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	a0004	322	1	1	0	0	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG2_chr14_67614920_67656708	1/1	a0001	354	431	91	84	196	16	42	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	a0002	354	6	6	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	a0003	354	1	1	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARGFX_chr3_121562949_121595622	1/0	a0001	315	312	67	52	147	10	35	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/1	a0002	315	66	12	28	14	5	6	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	a0003	315	15	15	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	a0004	315	7	0	1	6	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	a0005	67	3	0	3	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	a0006	315	2	0	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622