JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NRAS_chr1_114699469_114721771	0/0	a0002	189	1	0	0	0	0	1	copy fasta	NRAS	chr1	114699469	114721771
NRAS_chr1_114699469_114721771	0/0	a0003	189	1	0	0	1	0	0	copy fasta	NRAS	chr1	114699469	114721771
NRBF2_chr10_63128328_63160024	1/1	a0001	287	390	90	74	166	16	42	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	a0002	287	2	2	0	0	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBP1_chr2_27423631_27447259	1/1	a0001	535	267	81	55	82	11	36	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	a0002	535	6	3	3	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	a0003	535	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	a0004	535	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	a0005	331	1	0	0	0	1	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP2_chr8_143828583_143845973	1/1	a0001	501	384	82	69	178	12	41	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	a0002	501	13	11	1	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	a0003	501	2	1	0	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	a0004	501	1	0	0	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRCAM_chr7_108142649_108461436	0/1	a0001	1304	124	28	30	37	5	23	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	1/0	a0002	1304	76	41	13	10	1	10	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0003	1304	2	2	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0004	1304	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0005	1304	1	0	0	0	0	1	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0006	1304	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0007	1304	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0008	1304	1	0	1	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	a0009	1304	1	0	0	1	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRDC_chr1_51784210_51883727	1/1	a0001	1151	136	73	18	18	5	20	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	a0002	1150	101	18	25	41	1	16	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	a0003	1151	3	3	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	a0004	1150	2	0	0	2	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	a0005	1150	1	0	0	1	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	a0006	1151	1	0	1	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDE2_chr14_90262860_90336941	1/0	a0001	1164	223	77	44	70	6	25	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/1	a0002	1164	96	4	22	56	4	9	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0003	1164	9	9	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0004	1164	3	3	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0005	1164	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0006	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0007	1158	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0008	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0009	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0010	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0011	1164	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0012	1164	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0013	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0014	1164	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0015	1164	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	a0016	1164	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NREP_chr5_111724303_111762194	1/0	a0001	68	371	90	64	160	12	44	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	a0002	68	62	6	6	50	0	0	copy fasta	NREP	chr5	111724303	111762194
NRF1_chr7_129606720_129762076	1/1	a0001	503	384	80	72	176	14	40	copy fasta	NRF1	chr7	129606720	129762076
NRG1_chr8_32543311_32779046	1/1	a0001	640	99	46	21	14	5	11	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0002	640	67	4	12	30	5	16	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0003	640	27	0	3	20	0	4	copy fasta	NRG1	chr8	32543311	32779046