JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NRG1_chr8_32543311_32779046	0/0	a0004	640	10	10	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0005	640	10	1	5	0	2	2	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0006	640	9	1	1	6	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0007	640	7	7	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0008	640	5	5	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0009	640	4	0	2	0	2	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0010	640	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0011	640	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0012	640	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0013	640	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0014	640	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	a0015	640	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG2_chr5_139841781_140048299	1/1	a0001	850	144	37	36	47	7	15	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0002	848	32	18	7	4	1	2	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0003	850	5	0	1	0	0	4	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0004	850	2	2	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0005	850	1	0	0	0	0	1	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0006	850	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0007	850	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0008	850	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	a0009	848	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG3_chr10_81870194_82992178	0/0	a0001	696	53	29	9	8	2	5	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	a0002	696	9	6	2	0	0	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	a0003	694	3	2	1	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	a0004	696	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG4_chr15_75935936_76017424	1/1	a0001	115	362	77	60	173	14	36	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	a0002	115	5	5	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	a0003	115	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRGN_chr11_124734942_124752210	1/1	a0001	78	394	92	68	174	12	46	copy fasta	NRGN	chr11	124734942	124752210
NRIP1_chr21_14956235_15070000	1/1	a0001	1158	322	74	65	141	14	26	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0002	1158	49	1	0	42	0	6	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0003	1158	5	5	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0004	1158	4	4	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0005	1158	4	3	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0006	1158	3	0	2	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0007	1158	3	1	0	0	0	2	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0008	1158	2	0	2	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0009	1158	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0010	1158	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0011	1158	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0012	1158	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0013	1158	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	a0014	1158	1	0	0	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP2_chr12_2820348_2840035	1/1	a0001	281	417	92	74	199	10	40	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	a0002	281	2	2	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	a0003	281	2	0	2	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	a0004	281	1	0	0	1	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP3_chr11_8975576_9009001	1/1	a0001	241	392	89	61	184	12	44	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	a0002	241	6	0	0	6	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	a0003	241	4	4	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001