JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NRIP3_chr11_8975576_9009001	0/0	a0004	241	2	0	0	2	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	a0005	241	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	a0006	241	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRK_chrX_105817539_105963610	1/1	a0001	1582	125	17	23	62	4	17	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0002	1582	51	16	12	14	0	9	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0003	1582	29	28	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0004	1582	7	7	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0005	1582	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0006	1582	1	0	0	0	1	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0007	1582	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0008	1006	1	0	0	1	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0009	1582	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0010	1582	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	a0011	1540	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRL_chr14_24073662_24119949	1/1	a0001	237	375	93	66	162	12	40	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	a0002	237	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRM_chr6_30683049_30695984	0/1	a0001	262	428	85	81	196	18	47	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	a0002	262	15	1	3	10	0	1	copy fasta	NRM	chr6	30683049	30695984
NRN1L_chr16_67879885_67891368	1/1	a0001	165	208	40	47	76	11	32	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0002	165	55	24	14	10	1	6	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0003	165	20	17	1	0	0	2	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0004	165	6	6	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0005	165	4	4	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0006	165	2	0	0	2	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0007	165	2	2	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	a0008	165	1	1	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1_chr6_5992999_6011925	1/1	a0001	142	462	94	82	220	18	46	copy fasta	NRN1	chr6	5992999	6011925
NRP1_chr10_33172493_33339667	0/1	a0001	923	216	66	40	74	7	28	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0002	923	35	2	9	19	1	4	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0003	923	5	4	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0004	923	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0005	923	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0006	923	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0007	923	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	a0008	923	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	1/0	a0009	923	1	0	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP2_chr2_205677501_205803131	1/1	a0001	926	335	81	72	129	16	35	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0002	926	10	9	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0003	926	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0004	926	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0005	926	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0006	926	1	0	0	0	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0007	926	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	a0008	926	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRROS_chr3_196634694_196667004	1/0	a0001	692	448	92	75	218	16	46	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/1	a0002	692	14	0	10	0	2	1	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	a0003	692	4	4	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	a0004	692	2	2	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	a0005	692	1	0	1	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	a0006	692	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004