JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NRROS_chr3_196634694_196667004	0/0	a0007	692	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	a0008	692	1	0	0	0	0	1	copy fasta	NRROS	chr3	196634694	196667004
NRSN1_chr6_24121215_24152530	1/1	a0001	195	401	98	74	172	16	39	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	a0002	195	4	0	2	0	0	2	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	a0003	195	1	0	0	0	0	1	copy fasta	NRSN1	chr6	24121215	24152530
NRSN2_chr20_342111_359862	1/1	a0001	204	363	60	72	166	18	45	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	a0002	204	42	30	6	4	0	2	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	a0003	204	5	5	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	a0004	204	2	2	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	a0005	204	1	0	0	0	0	1	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	a0006	204	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRTN_chr19_5800067_5833324	1/1	a0001	197	365	86	79	145	14	39	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	a0002	197	34	7	5	13	0	9	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	a0003	197	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	a0004	197	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	a0005	197	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRXN1_chr2_49913503_51037132	0/0	a0001	1507	112	55	22	23	4	8	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	a0002	1507	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	a0003	1507	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	a0004	1507	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	a0005	1507	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN2_chr11_64601174_64728197	1/1	a0001	1712	230	60	39	98	9	22	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0002	1712	70	20	12	29	3	6	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0003	1712	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0004	1712	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0005	1712	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0006	1712	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0007	1712	1	0	1	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0008	1712	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0009	1712	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	a0010	1712	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN3_chr14_78165373_79873291	0/0	a0001	1571	22	18	4	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	a0002	1571	2	0	2	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NSA2_chr5_74762249_74785113	1/1	a0001	260	397	88	78	176	12	41	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	a0002	260	3	0	0	0	0	3	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	a0003	260	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	a0004	260	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSD1_chr5_177128773_177305213	1/1	a0001	2696	179	61	36	51	8	21	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0002	2696	80	5	13	53	2	7	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0003	2696	10	3	1	2	0	4	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0004	2696	5	4	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0005	2696	4	4	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0006	2696	4	4	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0007	2696	3	3	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0008	2696	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0009	2696	2	1	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0010	2696	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0011	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0012	2696	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0013	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213