JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NSD1_chr5_177128773_177305213	0/0	a0014	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0015	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0016	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0017	2696	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	a0018	2696	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD2_chr4_1866393_1987192	1/1	a0001	1365	127	60	30	20	7	8	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	a0002	1365	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	a0003	1365	1	0	0	0	1	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	a0004	1365	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD3_chr8_38264704_38387271	1/1	a0001	1437	217	39	42	106	13	15	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0002	1437	2	2	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0003	1437	2	2	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0004	1437	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0005	1437	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0006	1437	1	0	0	0	1	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0007	1437	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	a0008	1437	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSDHL_chrX_152826063_152874729	1/1	a0001	373	318	74	52	147	9	34	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	a0002	373	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	a0003	373	2	0	0	2	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	a0004	373	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSFL1C_chr20_1437166_1471849	0/0	a0001	370	189	30	32	107	3	17	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	1/1	a0002	370	177	59	26	60	7	23	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	a0003	370	2	1	1	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	a0004	370	2	0	0	0	0	2	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	a0005	370	1	0	1	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	a0006	370	1	0	0	1	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSF_chr17_46585669_46762464	0/1	a0001	744	5	2	2	0	0	0	copy fasta	NSF	chr17	46585669	46762464
NSG1_chr4_4382102_4424058	1/1	a0001	185	393	98	70	159	18	46	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	a0002	48	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG2_chr5_174040706_174114179	1/1	a0001	171	294	92	64	86	10	40	copy fasta	NSG2	chr5	174040706	174114179
NSL1_chr1_212721153_212796777	1/1	a0001	281	160	33	32	75	6	12	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	a0002	281	128	26	17	65	6	14	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	a0003	281	73	28	9	28	0	8	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	a0004	281	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	a0005	281	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	a0006	281	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSMAF_chr8_58578508_58664853	1/1	a0001	917	290	74	50	121	14	29	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0002	917	64	8	2	52	0	2	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0003	917	4	4	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0004	917	3	0	0	3	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0005	917	2	2	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0006	917	2	2	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0007	917	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0008	917	1	0	0	0	0	1	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	a0009	917	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMCE1_chr16_27219994_27273772	1/1	a0001	266	190	48	32	70	10	28	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	a0002	266	99	13	14	61	2	9	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	a0003	266	40	36	4	0	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	a0004	266	2	0	0	2	0	0	copy fasta	NSMCE1	chr16	27219994	27273772