JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NSMCE1_chr16_27219994_27273772	0/0	a0005	266	1	0	0	1	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	a0006	266	1	0	0	0	0	1	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	a0007	266	1	1	0	0	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE2_chr8_125086860_125372120	1/1	a0001	247	240	87	50	75	4	22	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	a0002	247	2	2	0	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	a0003	247	1	0	0	1	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	a0004	247	1	1	0	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE3_chr15_29259989_29274822	0/1	a0001	304	376	61	80	176	18	40	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	a0002	304	20	18	2	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	a0003	304	10	9	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	a0004	304	7	6	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	a0005	304	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE4A_chr10_121952091_121980217	1/1	a0001	385	426	96	80	189	16	43	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	a0002	385	4	1	2	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	a0003	385	1	0	0	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	a0004	385	1	0	0	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	a0005	385	1	0	0	0	0	1	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	a0006	385	1	1	0	0	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMF_chr9_137442570_137464334	1/1	a0001	530	414	94	80	172	18	48	copy fasta	NSMF	chr9	137442570	137464334
NSRP1_chr17_30111816_30191475	1/1	a0001	558	258	89	51	67	12	37	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0002	558	7	0	4	3	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0003	558	3	3	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0004	558	3	0	2	0	1	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0005	558	3	0	2	0	1	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0006	558	2	0	0	2	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0007	558	1	0	0	1	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0008	558	1	0	0	1	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0009	558	1	0	1	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0010	558	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0011	558	1	0	0	0	0	1	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	a0012	558	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSUN2_chr5_6594239_6638044	1/1	a0001	767	389	83	72	176	15	41	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0002	767	20	8	7	0	1	4	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0003	767	17	0	0	17	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0004	767	8	7	1	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0005	767	2	0	2	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0006	767	1	0	0	0	0	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	a0007	767	1	0	0	1	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN3_chr3_94058061_94136832	1/1	a0001	340	327	73	66	130	16	40	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	a0002	340	5	5	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	a0003	340	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	a0004	340	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN4_chr1_46335807_46370018	1/1	a0001	384	145	60	28	44	3	8	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0002	384	108	9	24	61	8	6	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0003	384	87	5	7	50	4	21	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0004	384	28	8	12	2	3	3	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0005	384	11	11	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0006	384	3	0	3	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0007	384	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0008	384	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018