JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NSUN4_chr1_46335807_46370018	0/0	a0009	384	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0010	384	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	a0011	280	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN5_chr7_73297516_73313826	1/1	a0001	466	397	79	78	183	15	40	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0002	466	8	0	0	8	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0003	466	5	5	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0004	466	3	2	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0005	466	2	0	0	2	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0006	466	1	0	0	1	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0007	466	1	1	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0008	466	1	1	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0009	466	1	0	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	a0010	466	1	0	0	0	1	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN6_chr10_18540561_18656587	1/1	a0001	469	335	83	73	131	14	32	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0002	469	3	3	0	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0003	469	2	0	2	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0004	469	2	0	2	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0005	469	1	0	1	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0006	318	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0007	469	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	a0008	469	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN7_chr4_40744955_40816184	0/1	a0001	718	212	48	45	96	6	16	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0002	718	100	12	5	67	0	16	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0003	718	50	13	24	6	2	5	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0004	718	8	8	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0005	718	3	1	2	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0006	718	3	2	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	1/0	a0007	718	3	0	2	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0008	718	2	0	0	2	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0009	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0010	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0011	218	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0012	718	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0013	528	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0014	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0015	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0016	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0017	718	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0018	718	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	a0019	718	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NT5C1A_chr1_39646229_39677107	1/1	a0001	368	316	81	53	128	14	38	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	a0002	368	5	5	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	a0003	368	3	0	3	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	a0004	368	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	a0005	368	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1B_chr2_18557871_18594569	1/0	a0001	550	333	71	61	148	14	38	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/1	a0002	115	33	1	10	19	2	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0003	550	19	15	4	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0004	52	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0005	550	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569