JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NT5C1B_chr2_18557871_18594569	0/0	a0006	550	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0007	550	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0008	550	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0009	550	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	a0010	550	1	0	1	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C2_chr10_103083038_103198272	1/1	a0001	561	308	64	51	143	10	38	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	a0002	561	31	2	11	16	2	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	a0003	561	1	0	0	1	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C3A_chr7_33009130_33067776	1/1	a0001	331	398	94	69	181	14	38	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	a0002	331	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	a0003	331	1	0	1	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3B_chr17_41820057_41841232	0/1	a0001	300	283	64	65	117	9	27	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	1/0	a0002	300	82	20	16	29	3	13	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	a0003	300	1	0	1	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	a0004	300	1	1	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	a0005	300	1	1	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C_chr17_75125228_75136742	1/1	a0001	201	409	94	75	182	18	38	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	a0002	201	6	0	6	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	a0003	201	1	0	1	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	a0004	201	1	1	0	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	a0005	201	1	1	0	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5DC1_chr6_116095853_116254497	1/1	a0001	455	297	92	55	104	12	32	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	a0002	455	2	0	2	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	a0003	455	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC2_chr3_52519387_52538857	0/1	a0001	557	185	46	46	79	5	8	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	1/0	a0002	557	165	28	29	71	10	26	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0003	557	29	21	5	0	1	2	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0004	557	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0005	557	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0006	557	1	1	0	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0007	557	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0008	557	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0009	252	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	a0010	557	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC3_chr12_103767310_103846234	1/1	a0001	548	383	94	80	147	18	42	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	a0002	548	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	a0003	548	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC4_chr2_112716020_112744095	0/1	a0001	455	148	13	32	77	5	20	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0002	455	114	21	24	43	9	17	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0003	455	42	11	16	12	0	3	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	1/0	a0004	455	26	23	1	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0005	455	7	7	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0006	455	7	7	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0007	455	4	3	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0008	455	4	4	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0009	455	2	2	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0010	455	2	0	2	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0011	455	2	1	1	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0012	455	2	2	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0013	455	1	0	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095