JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NT5DC4_chr2_112716020_112744095	0/0	a0014	455	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0015	455	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	a0016	455	1	0	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5E_chr6_85445083_85500784	0/0	a0001	574	218	52	33	104	5	24	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	1/1	a0002	574	72	1	6	53	5	5	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	a0003	574	46	31	3	11	0	1	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	a0004	574	3	3	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	a0005	574	2	0	0	0	2	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	a0006	574	1	1	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5M_chr17_17298373_17352663	1/1	a0001	228	345	90	76	123	12	42	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	a0002	69	1	0	0	0	0	1	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	a0003	228	1	0	0	0	0	1	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	a0004	50	1	0	0	1	0	0	copy fasta	NT5M	chr17	17298373	17352663
NTAN1_chr16_15032857_15061074	0/1	a0001	310	297	78	43	133	13	29	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	a0002	310	156	14	27	89	5	21	copy fasta	NTAN1	chr16	15032857	15061074
NTAQ1_chr8_123411774_123447240	1/0	a0001	205	194	56	42	61	12	22	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/1	a0002	205	170	30	32	84	2	21	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	a0003	203	1	0	0	1	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	a0004	205	1	0	0	0	0	1	copy fasta	NTAQ1	chr8	123411774	123447240
NTF3_chr12_5427108_5500299	1/1	a0001	270	315	74	66	123	16	34	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	a0002	270	53	17	10	25	0	1	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	a0003	270	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	a0004	270	1	0	0	0	0	1	copy fasta	NTF3	chr12	5427108	5500299
NTF4_chr19_49056128_49069818	1/1	a0001	210	394	88	74	174	14	42	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	a0002	210	2	0	0	0	0	2	copy fasta	NTF4	chr19	49056128	49069818
NTHL1_chr16_2034820_2052834	1/1	a0001	304	387	97	77	147	18	46	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	a0002	304	3	0	0	3	0	0	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	a0003	304	2	1	1	0	0	0	copy fasta	NTHL1	chr16	2034820	2052834
NTMT1_chr9_129621163_129641135	1/1	a0001	223	414	98	68	183	14	49	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	a0002	223	1	0	0	0	0	1	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	a0003	223	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT2_chr1_170140959_170173866	1/0	a0001	283	232	41	52	96	12	30	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/1	a0002	283	105	40	23	31	4	6	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	a0003	283	11	5	1	0	0	5	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	a0004	283	3	0	0	1	0	2	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	a0005	283	3	0	2	0	0	1	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	a0006	283	2	2	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTM_chr11_131365615_132341822	0/0	a0001	355	83	41	21	2	5	14	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	a0002	355	3	1	1	0	1	0	copy fasta	NTM	chr11	131365615	132341822
NTN1_chr17_9016510_9249000	1/1	a0001	604	258	90	66	54	10	36	copy fasta	NTN1	chr17	9016510	9249000
NTN3_chr16_2466297_2479145	1/1	a0001	580	272	73	56	93	12	36	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0002	580	7	7	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0003	580	3	0	0	0	0	3	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0004	580	3	0	0	3	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0005	580	2	2	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0006	580	2	0	0	2	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0007	580	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0008	562	1	0	0	0	1	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0009	580	1	0	0	0	0	1	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0010	580	1	0	0	0	1	0	copy fasta	NTN3	chr16	2466297	2479145