JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NTN3_chr16_2466297_2479145	0/0	a0011	580	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0012	580	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0013	580	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0014	580	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0015	580	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0016	580	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	a0017	580	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN4_chr12_95652807_95795764	1/1	a0001	628	304	81	51	135	9	26	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0002	628	15	0	7	1	1	6	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0003	628	1	1	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0004	628	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0005	628	1	0	0	0	1	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0006	628	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	a0007	628	1	0	0	0	1	0	copy fasta	NTN4	chr12	95652807	95795764
NTN5_chr19_48656407_48678017	1/0	a0001	489	398	89	71	185	12	40	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0002	489	4	3	1	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0003	489	3	0	0	3	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/1	a0004	489	2	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0005	489	2	0	2	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0006	489	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0007	489	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	a0008	489	1	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTNG1_chr1_107136039_107489923	1/1	a0001	539	150	72	30	24	6	16	copy fasta	NTNG1	chr1	107136039	107489923
NTNG2_chr9_132157058_132249526	0/1	a0001	530	352	91	66	142	13	39	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	a0002	530	2	0	0	0	1	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	1/0	a0003	530	2	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	a0004	530	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	a0005	530	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTPCR_chr1_232945611_232988882	1/1	a0001	190	374	76	72	167	18	39	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	a0002	190	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	a0003	190	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTRK1_chr1_156855865_156886850	1/1	a0001	796	361	87	72	151	13	36	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0002	796	11	0	7	0	0	4	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0003	796	4	3	1	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0004	796	3	0	0	3	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0005	796	2	2	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0006	796	1	0	0	0	1	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0007	796	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0008	796	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0009	796	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0010	796	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0011	539	1	0	0	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0012	796	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0013	796	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0014	796	1	0	0	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0015	796	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	a0016	796	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK2_chr9_84664729_85032054	1/1	a0001	838	167	65	31	49	0	20	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	a0002	838	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	a0003	838	1	0	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054