JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NTRK2_chr9_84664729_85032054	0/0	a0004	838	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK3_chr15_87854751_88261739	1/1	a0001	839	133	69	20	20	6	16	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	a0002	839	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTSR1_chr20_62703836_62767771	1/1	a0001	418	294	77	65	106	10	34	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0002	418	7	5	2	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0003	418	6	2	2	0	2	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0004	418	4	3	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0005	418	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0006	418	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0007	418	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0008	418	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	a0009	418	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR2_chr2_11653178_11675195	0/1	a0001	410	410	55	68	226	16	44	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0002	410	28	23	5	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0003	410	10	9	1	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0004	410	3	3	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0005	410	2	0	0	2	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0006	410	2	2	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	1/0	a0007	410	1	0	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0008	410	1	0	0	1	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0009	410	1	1	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0010	410	1	1	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	a0011	410	1	0	0	1	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTS_chr12_85869295_85887992	1/1	a0001	170	417	91	79	183	16	46	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	a0002	170	1	0	1	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	a0003	170	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	a0004	170	1	0	0	1	0	0	copy fasta	NTS	chr12	85869295	85887992
NUAK1_chr12_106058345_106143954	1/1	a0001	661	248	87	45	74	4	36	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0002	661	103	4	13	67	9	10	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0003	661	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0004	661	1	0	0	1	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0005	661	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0006	661	1	0	0	0	1	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	a0007	661	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK2_chr1_205297063_205326745	1/1	a0001	628	318	63	66	129	17	41	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	a0002	628	64	28	6	28	1	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	a0003	628	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	a0004	628	1	0	0	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUB1_chr7_151336812_151383449	1/1	a0001	615	406	94	76	169	16	49	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0002	615	2	0	0	2	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0003	615	2	0	2	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0004	615	1	1	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0005	615	1	1	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0006	615	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0007	615	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0008	615	1	0	0	0	0	1	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0009	615	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0010	615	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	a0011	615	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUBP1_chr16_10738842_10774351	1/1	a0001	320	381	87	63	185	18	26	copy fasta	NUBP1	chr16	10738842	10774351