JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUBP1_chr16_10738842_10774351	0/0	a0002	320	38	7	7	12	0	12	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	a0003	320	2	0	2	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	a0004	320	1	1	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	a0005	320	1	1	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	a0006	320	1	0	0	1	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP2_chr16_1777960_1794186	1/1	a0001	271	387	49	77	197	15	47	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0002	271	46	45	1	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0003	271	2	2	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0004	271	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0005	271	1	0	0	0	1	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0006	271	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0007	271	1	0	0	0	0	1	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0008	271	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0009	271	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	a0010	271	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBPL_chr14_31556404_31866224	1/1	a0001	319	265	85	47	85	12	34	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	a0002	319	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	a0003	319	1	0	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	a0004	319	1	0	0	1	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUCB1_chr19_48895312_48928372	1/1	a0001	461	387	91	73	168	15	38	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	a0002	461	7	7	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	a0003	461	1	0	0	0	1	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	a0004	457	1	0	0	1	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	a0005	461	1	0	0	1	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	a0006	461	1	0	1	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB2_chr11_17271739_17337211	1/1	a0001	420	165	62	40	39	4	18	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	a0002	419	100	8	13	71	2	6	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	a0003	420	92	0	19	59	2	12	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	a0004	420	2	0	2	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	a0005	420	1	0	0	1	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCKS1_chr1_205707822_205755182	1/1	a0001	243	368	96	64	154	14	38	copy fasta	NUCKS1	chr1	205707822	205755182
NUDCD1_chr8_109235919_109339087	0/0	a0001	583	126	17	27	69	7	6	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	1/1	a0002	583	118	7	23	70	3	13	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0003	583	83	52	13	9	2	7	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0004	583	14	0	1	0	2	11	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0005	583	9	9	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0006	583	4	4	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0007	583	3	0	0	0	0	3	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0008	583	2	2	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	a0009	583	1	1	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD2_chr5_163441526_163465102	1/1	a0001	157	426	92	76	200	14	42	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD3_chr7_44374119_44495658	1/0	a0001	361	189	41	37	70	10	30	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	a0002	361	28	19	6	0	0	3	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/1	a0003	361	17	0	4	3	4	5	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	a0004	361	3	2	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	a0005	361	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDC_chr1_26916743_26951871	1/1	a0001	331	253	85	64	46	16	40	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	a0002	331	1	1	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDT10_chrX_51327822_51342525	1/1	a0001	164	304	74	55	128	11	34	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	a0002	238	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525