JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUDT10_chrX_51327822_51342525	0/0	a0003	111	1	0	1	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT11_chrX_51485011_51501592	0/1	a0001	113	270	73	48	105	11	32	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	a0002	14	3	3	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	1/0	a0003	164	1	0	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT12_chr5_103543855_103567789	1/0	a0001	462	417	81	68	205	16	46	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/1	a0002	462	16	8	7	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	a0003	462	3	2	1	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	a0004	462	1	1	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	a0005	462	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT13_chr10_73105455_73136823	1/1	a0001	352	298	66	41	149	4	36	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0002	329	18	16	2	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0003	352	2	1	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0004	156	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0005	352	1	0	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0006	352	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0007	352	1	0	0	1	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0008	352	1	0	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	a0009	352	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT14_chr14_105167939_105186312	1/1	a0001	222	397	94	74	170	10	47	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	a0002	222	1	0	0	0	0	1	copy fasta	NUDT14	chr14	105167939	105186312
NUDT15_chr13_48032726_48052221	1/1	a0001	164	400	96	70	166	18	48	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	a0002	166	11	0	3	8	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	a0003	164	10	0	0	10	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	a0004	164	2	0	0	2	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	a0005	164	1	0	1	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT16L1_chr16_4688562_4700844	1/1	a0001	211	439	98	80	195	18	46	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	a0002	211	1	0	0	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16_chr3_131376774_131393830	1/1	a0001	195	418	82	72	203	16	43	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	a0002	195	1	0	0	0	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	a0003	195	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT17_chr1_145840630_145853954	1/1	a0001	328	405	95	70	178	18	42	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	a0002	328	1	1	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT18_chr8_22101878_22114419	0/0	a0001	323	216	45	45	96	6	24	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	1/1	a0002	323	178	50	30	69	12	15	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0003	323	1	0	1	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0004	323	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0005	323	1	0	0	0	0	1	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0006	323	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0007	323	1	1	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	a0008	323	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT19_chr19_32686821_32718792	1/1	a0001	375	302	62	48	144	11	35	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0002	375	95	24	9	52	3	7	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0003	375	3	3	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0004	375	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0005	375	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0006	375	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0007	375	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0008	375	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	a0009	375	1	0	1	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT1_chr7_2237226_2256145	1/1	a0001	156	393	94	77	162	16	42	copy fasta	NUDT1	chr7	2237226	2256145