JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUDT1_chr7_2237226_2256145	0/0	a0002	156	18	0	1	15	0	2	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	a0003	156	1	1	0	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	a0004	156	1	0	0	1	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	a0005	156	1	1	0	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT21_chr16_56424133_56456332	1/1	a0001	227	414	92	70	194	12	44	copy fasta	NUDT21	chr16	56424133	56456332
NUDT22_chr11_64221274_64235016	0/1	a0001	303	286	37	73	136	5	34	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0002	303	51	29	2	14	0	6	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	1/0	a0003	303	21	19	1	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0004	303	6	1	0	5	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0005	303	1	1	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0006	303	1	0	0	0	1	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0007	303	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0008	303	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0009	303	1	1	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	a0010	303	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT2_chr9_34324569_34348699	1/1	a0001	147	435	90	86	190	17	50	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	0/0	a0002	147	1	0	0	0	1	0	copy fasta	NUDT2	chr9	34324569	34348699
NUDT3_chr6_34274679_34397669	1/1	a0001	172	269	75	50	114	4	24	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	a0002	172	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT4B_chr1_148743774_148757415	0/0	a0001	181	99	2	19	76	0	2	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	a0002	181	1	0	1	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4_chr12_93372925_93413146	1/1	a0001	180	413	98	75	178	16	44	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	a0002	180	1	0	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT5_chr10_12160330_12200891	1/1	a0001	219	393	82	73	190	12	34	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	a0002	219	1	0	1	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT6_chr4_122887577_122927597	1/1	a0001	316	134	68	30	19	3	12	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0002	316	122	15	28	63	5	11	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0003	316	107	2	12	70	6	17	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0004	316	2	2	0	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0005	316	1	0	0	1	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0006	316	1	1	0	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	a0007	316	1	0	0	1	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT7_chr16_77717514_77747260	1/1	a0001	238	290	79	56	114	10	29	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0002	238	106	7	12	68	3	16	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0003	238	51	6	6	34	3	2	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0004	7	6	0	6	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0005	238	4	4	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0006	238	2	0	0	0	0	2	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0007	238	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0008	238	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	a0009	238	1	0	0	0	0	1	copy fasta	NUDT7	chr16	77717514	77747260
NUDT8_chr11_67622938_67634937	1/1	a0001	236	352	93	71	140	15	31	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0002	223	16	0	1	15	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0003	236	4	1	0	0	2	1	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0004	236	1	1	0	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0005	236	1	0	0	0	1	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0006	236	1	1	0	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	a0007	236	1	0	0	1	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT9_chr4_87417573_87464455	1/1	a0001	350	386	89	52	196	16	31	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	a0002	350	12	11	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455